Orphaned databases in Cpanel
If for some reason Cpanel’s database cache is out of sync and you can’t remove or delete non-existant databases, you can do so manually: Remove orphaned DB entries from: /var/cpanel/databases/dbindex.db Same here: /var/cpanel/databases/<username>.yaml Then execute the following: /usr/local/cpanel/bin/setupdbmap /scripts/update_db_cache